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Accessing chemical hazard and
safety data via the internet
Antony Williams1, Todd Martin1 and
Valery Tkachenko2
1. Center for Computational Toxicology & Exposure, U.S. Environmental Protection Agency
2. ScienceDataExperts Inc.
http://www.orcid.org/0000-0002-2668-4821
DECON Conference, Charleston, SC
The views expressed in this presentation are those of the author and do not necessarily reflect the views or policies of the U.S. EPA
Free-Access Cheminformatics Tools
• The Center for Computational Toxicology and
Exposure has delivered many tools to quickly
access data for chemicals
– CompTox Chemicals Dashboard (available since 2016)
(https://comptox.epa.gov/dashboard)
– Cheminformatics modules (6 PoC modules in total)
(https://www.epa.gov/chemical-research/cheminformatics)
• Hazard Profiling (public)
1
Everything is underpinned by the
DSSTox Database
2
• >1.2M substances
• Highly curated data
• Mapped relationships
• The data are made
available via the
Dashboard…
CompTox Chemicals Dashboard
https://comptox.epa.gov/dashboard
3
• Searching 1.2M chemicals – CAS Numbers,
systematic names and synonyms, structures
1 of ~1.2M Chemical Pages
4
Chemical Lists
• 425 substance lists related to regulatory lists
• Many of interest to this group?
– 3 Chem Weapons Lists
5
Chemical Lists
• 425 substance lists related to regulatory lists
• Many of interest to this group?
– 3 Chem Weapons Lists
– Clean Water Act Hazardous Substances
6
Chemical Lists
• 425 substance lists related to regulatory lists
• Many of interest to this group?
– 3 Chem Weapons Lists
– Clean Water Act Hazardous Substances
– AEGLS
7
So you can harvest data
e.g., EPA AEGLs data
8
How to compare Hazard Data?
9
• Search thousands of chemicals based on
CASRN, names and identifiers
• Harvest available data including properties,
toxicity data, chemical relationships, category
mappings, presence in lists
Batch Searching is a big enabler
https://pubs.acs.org/doi/10.1021/acs.jcim.0c01273
10
How to compare Hazard Data?
11
How to compare Hazard Data?
NOT Easy to interpret…
12
Hazard Comparison Module
“Resolver” searching for all identifiers
13
SMILES
NAMES
CAS RN
InChIKey
DTXSIDs
Profiling the toxicity of chemicals
MUCH easier…
14
• The Hazard Comparison module profiles
toxicity across chemicals
• https://www.epa.gov/chemical-research/cheminformatics
Hazard Profile
On-Hover view of trumping scheme call
15
Hazard Profile
On-click view of underlying data
16
Easy Export of all data to Excel or SDF
17
Free-Access Cheminformatics Tools
• The Center for Computational Toxicology and
Exposure has delivered many tools to quickly
access data for chemicals
– CompTox Chemicals Dashboard (available since 2016)
(https://comptox.epa.gov/dashboard)
– Cheminformatics modules (6 PoC modules in total)
(https://www.epa.gov/chemical-research/cheminformatics)
• Hazard Profiling (public)
• Safety Profiling (work in progress - internal)
– Analytical Methods and Open Spectra (AMOS – internal)
18
Hazard versus Safety Profiling
• Hazard profiling is toxicity-based comparison
of one or more chemicals
• Safety profiling is different
– Primarily concerning acute toxicity of chemicals
• GHS Classification
– Includes data of relevance to emergency responders
• Firefighting details
• Accidental release measures
• Spillage disposal and clean up
19
Safety Profiling
(Internal Deployment only)
• New module (already testing inside EPA)
20
Data Harvested via PubChem
21
Vinyl Chloride Public Data
22
Integrate Data into a Safety View
23
Simple PDF Generation – All Data
24
What if we had tools like this?
• Emergency Response utility is obvious…
• Consider East Palestine
25
https://www.cleveland19.com/2023/
02/14/ntsb-announces-preliminary-
malfunction-that-caused-east-
palestine-train-derailment/
What if we had tools like this?
• Emergency Response utility is obvious…
• Consider East Palestine
26
https://www.cleveland19.com/2023/
02/14/ntsb-announces-preliminary-
malfunction-that-caused-east-
palestine-train-derailment/
POLYPROPYLENE
POLYETHYLENE
Residue lube oil
VINYL CHLORIDE
DIPROPYLENE GLYCOL
PROPYLENE GLYCOL
DIETHYLENE GLYCOL
COMBUSTIBLE LIQ., NOS (ETHYLENE GLYCOL MONOBUTYL ETHER)
SEMOLINA
COMBUSTIBLE LIQ., NOS (ETHYLHEXYL ACRYLATE)
POLYVINYL
PETROLEUM LUBEOIL
POLYPROPYL GLYCOL
ISOBUTYLENE
BUTYL ACRYLATES, STABILIZED
PETRO OIL, NEC
ADDITIVES, FUEL
BALLS,CTN,M EDCL
SHEET STEEL
VEGTABLE, FROZEN
BENZENE
PARAFFIN WAX
FLAKES, POWDER
HYDRAULIC CEMENT
AUTOS PASSENGER
MALT LIQUORS
How easy is it to source screening
data?
FILTERED TO
VINYL CHLORIDE
DIPROPYLENE GLYCOL
PROPYLENE GLYCOL
DIETHYLENE GLYCOL
ETHYLENE GLYCOL
MONOBUTYL ETHER
POLYVINYL
POLYPROPYL GLYCOL
ISOBUTYLENE
BUTYL ACRYLATE
ETHYLHEXYL ACRYLATE
PARAFFIN WAX
POLYPROPYLENE
POLYETHYLENE
27
ORIGINAL DATA
POLYPROPYLENE
POLYETHYLENE
Residue lube oil
VINYL CHLORIDE
DIPROPYLENE GLYCOL
PROPYLENE GLYCOL
DIETHYLENE GLYCOL
COMBUSTIBLE LIQ., NOS (ETHYLENE GLYCOL MONOBUTYL
ETHER)
SEMOLINA
COMBUSTIBLE LIQ., NOS (ETHYLHEXYL ACRYLATE)
POLYVINYL
PETROLEUM LUBEOIL
POLYPROPYL GLYCOL
ISOBUTYLENE
BUTYL ACRYLATES, STABILIZED
PETRO OIL, NEC
ADDITIVES, FUEL
BALLS,CTN,M EDCL
SHEET STEEL
VEGTABLE, FROZEN
BENZENE
PARAFFIN WAX
FLAKES, POWDER
HYDRAULIC CEMENT
AUTOS PASSENGER
MALT LIQUORS
Hazard Comparison Profiling
28
Hazard Comparison Profiling
29
Hazard Comparison Profiling
Data to Excel in <60s
31
Safety Profile in one more click
32
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
33
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
– Firefighting procedures
34
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
– Firefighting procedures
– Accidental release measures
35
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
– Firefighting procedures
– Accidental release measures
– Transport information
36
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
– Firefighting procedures
– Accidental release measures
– Transport information
– Toxic combustion products
37
Safety Profiling (work-in-progress)
• Safety data includes
– GHS data
– Firefighting procedures
– Accidental release measures
– Transport information
– Toxic combustion products
– History and Incidents
38
Historical Data can be very useful
39
AMOS: Analytical Methods and Open
Spectra Database
• Three types of data in the database:
– Methods (regulatory, lab manuals/SOPs, publications, tech notes)
– Spectra (from public domain and our own laboratories)
– Fact Sheets (harvested from SWGDRUG and other sites)
• Currently contains >230,000 spectra, >700,000
external links, 4100 “Fact Sheets” and ~4400 methods
• ALL data are growing in number weekly at present
40
Embedded Method PDFs
41
• Vinyl Chloride – 44 methods
Fact Sheets, Assessments, Processes
6 Vinyl Chloride Fact Sheets
42
Linking to actual spectra
Sources of Methods and Fact Sheets
44
Conclusions
• CompTox Chemicals Dashboard supports
research at EPA in numerous ways
– Assembly, integration and curation of chemistry data
– Flexible searches – names, structures, formulae, masses
• Proof-of-Concept tools
– https://www.epa.gov/chemical-research/cheminformatics
– Hazard Profiling tool
– Safety Profiling and comparison (in testing)
– Analytical methods and open spectra database (in testing)
45
Contact
Interested in a demo and overview of our tools?
Antony Williams
CCTE, US EPA Office of Research and Development,
Williams.Antony@epa.gov
ORCID: https://orcid.org/0000-0002-2668-4821
46

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Accessing chemical hazard and safety data via the internet

  • 1. Accessing chemical hazard and safety data via the internet Antony Williams1, Todd Martin1 and Valery Tkachenko2 1. Center for Computational Toxicology & Exposure, U.S. Environmental Protection Agency 2. ScienceDataExperts Inc. http://www.orcid.org/0000-0002-2668-4821 DECON Conference, Charleston, SC The views expressed in this presentation are those of the author and do not necessarily reflect the views or policies of the U.S. EPA
  • 2. Free-Access Cheminformatics Tools • The Center for Computational Toxicology and Exposure has delivered many tools to quickly access data for chemicals – CompTox Chemicals Dashboard (available since 2016) (https://comptox.epa.gov/dashboard) – Cheminformatics modules (6 PoC modules in total) (https://www.epa.gov/chemical-research/cheminformatics) • Hazard Profiling (public) 1
  • 3. Everything is underpinned by the DSSTox Database 2 • >1.2M substances • Highly curated data • Mapped relationships • The data are made available via the Dashboard…
  • 4. CompTox Chemicals Dashboard https://comptox.epa.gov/dashboard 3 • Searching 1.2M chemicals – CAS Numbers, systematic names and synonyms, structures
  • 5. 1 of ~1.2M Chemical Pages 4
  • 6. Chemical Lists • 425 substance lists related to regulatory lists • Many of interest to this group? – 3 Chem Weapons Lists 5
  • 7. Chemical Lists • 425 substance lists related to regulatory lists • Many of interest to this group? – 3 Chem Weapons Lists – Clean Water Act Hazardous Substances 6
  • 8. Chemical Lists • 425 substance lists related to regulatory lists • Many of interest to this group? – 3 Chem Weapons Lists – Clean Water Act Hazardous Substances – AEGLS 7
  • 9. So you can harvest data e.g., EPA AEGLs data 8
  • 10. How to compare Hazard Data? 9 • Search thousands of chemicals based on CASRN, names and identifiers • Harvest available data including properties, toxicity data, chemical relationships, category mappings, presence in lists
  • 11. Batch Searching is a big enabler https://pubs.acs.org/doi/10.1021/acs.jcim.0c01273 10
  • 12. How to compare Hazard Data? 11
  • 13. How to compare Hazard Data? NOT Easy to interpret… 12
  • 14. Hazard Comparison Module “Resolver” searching for all identifiers 13 SMILES NAMES CAS RN InChIKey DTXSIDs
  • 15. Profiling the toxicity of chemicals MUCH easier… 14 • The Hazard Comparison module profiles toxicity across chemicals • https://www.epa.gov/chemical-research/cheminformatics
  • 16. Hazard Profile On-Hover view of trumping scheme call 15
  • 17. Hazard Profile On-click view of underlying data 16
  • 18. Easy Export of all data to Excel or SDF 17
  • 19. Free-Access Cheminformatics Tools • The Center for Computational Toxicology and Exposure has delivered many tools to quickly access data for chemicals – CompTox Chemicals Dashboard (available since 2016) (https://comptox.epa.gov/dashboard) – Cheminformatics modules (6 PoC modules in total) (https://www.epa.gov/chemical-research/cheminformatics) • Hazard Profiling (public) • Safety Profiling (work in progress - internal) – Analytical Methods and Open Spectra (AMOS – internal) 18
  • 20. Hazard versus Safety Profiling • Hazard profiling is toxicity-based comparison of one or more chemicals • Safety profiling is different – Primarily concerning acute toxicity of chemicals • GHS Classification – Includes data of relevance to emergency responders • Firefighting details • Accidental release measures • Spillage disposal and clean up 19
  • 21. Safety Profiling (Internal Deployment only) • New module (already testing inside EPA) 20
  • 22. Data Harvested via PubChem 21
  • 24. Integrate Data into a Safety View 23
  • 25. Simple PDF Generation – All Data 24
  • 26. What if we had tools like this? • Emergency Response utility is obvious… • Consider East Palestine 25 https://www.cleveland19.com/2023/ 02/14/ntsb-announces-preliminary- malfunction-that-caused-east- palestine-train-derailment/
  • 27. What if we had tools like this? • Emergency Response utility is obvious… • Consider East Palestine 26 https://www.cleveland19.com/2023/ 02/14/ntsb-announces-preliminary- malfunction-that-caused-east- palestine-train-derailment/ POLYPROPYLENE POLYETHYLENE Residue lube oil VINYL CHLORIDE DIPROPYLENE GLYCOL PROPYLENE GLYCOL DIETHYLENE GLYCOL COMBUSTIBLE LIQ., NOS (ETHYLENE GLYCOL MONOBUTYL ETHER) SEMOLINA COMBUSTIBLE LIQ., NOS (ETHYLHEXYL ACRYLATE) POLYVINYL PETROLEUM LUBEOIL POLYPROPYL GLYCOL ISOBUTYLENE BUTYL ACRYLATES, STABILIZED PETRO OIL, NEC ADDITIVES, FUEL BALLS,CTN,M EDCL SHEET STEEL VEGTABLE, FROZEN BENZENE PARAFFIN WAX FLAKES, POWDER HYDRAULIC CEMENT AUTOS PASSENGER MALT LIQUORS
  • 28. How easy is it to source screening data? FILTERED TO VINYL CHLORIDE DIPROPYLENE GLYCOL PROPYLENE GLYCOL DIETHYLENE GLYCOL ETHYLENE GLYCOL MONOBUTYL ETHER POLYVINYL POLYPROPYL GLYCOL ISOBUTYLENE BUTYL ACRYLATE ETHYLHEXYL ACRYLATE PARAFFIN WAX POLYPROPYLENE POLYETHYLENE 27 ORIGINAL DATA POLYPROPYLENE POLYETHYLENE Residue lube oil VINYL CHLORIDE DIPROPYLENE GLYCOL PROPYLENE GLYCOL DIETHYLENE GLYCOL COMBUSTIBLE LIQ., NOS (ETHYLENE GLYCOL MONOBUTYL ETHER) SEMOLINA COMBUSTIBLE LIQ., NOS (ETHYLHEXYL ACRYLATE) POLYVINYL PETROLEUM LUBEOIL POLYPROPYL GLYCOL ISOBUTYLENE BUTYL ACRYLATES, STABILIZED PETRO OIL, NEC ADDITIVES, FUEL BALLS,CTN,M EDCL SHEET STEEL VEGTABLE, FROZEN BENZENE PARAFFIN WAX FLAKES, POWDER HYDRAULIC CEMENT AUTOS PASSENGER MALT LIQUORS
  • 32. Data to Excel in <60s 31
  • 33. Safety Profile in one more click 32
  • 34. Safety Profiling (work-in-progress) • Safety data includes – GHS data 33
  • 35. Safety Profiling (work-in-progress) • Safety data includes – GHS data – Firefighting procedures 34
  • 36. Safety Profiling (work-in-progress) • Safety data includes – GHS data – Firefighting procedures – Accidental release measures 35
  • 37. Safety Profiling (work-in-progress) • Safety data includes – GHS data – Firefighting procedures – Accidental release measures – Transport information 36
  • 38. Safety Profiling (work-in-progress) • Safety data includes – GHS data – Firefighting procedures – Accidental release measures – Transport information – Toxic combustion products 37
  • 39. Safety Profiling (work-in-progress) • Safety data includes – GHS data – Firefighting procedures – Accidental release measures – Transport information – Toxic combustion products – History and Incidents 38
  • 40. Historical Data can be very useful 39
  • 41. AMOS: Analytical Methods and Open Spectra Database • Three types of data in the database: – Methods (regulatory, lab manuals/SOPs, publications, tech notes) – Spectra (from public domain and our own laboratories) – Fact Sheets (harvested from SWGDRUG and other sites) • Currently contains >230,000 spectra, >700,000 external links, 4100 “Fact Sheets” and ~4400 methods • ALL data are growing in number weekly at present 40
  • 42. Embedded Method PDFs 41 • Vinyl Chloride – 44 methods
  • 43. Fact Sheets, Assessments, Processes 6 Vinyl Chloride Fact Sheets 42
  • 44. Linking to actual spectra
  • 45. Sources of Methods and Fact Sheets 44
  • 46. Conclusions • CompTox Chemicals Dashboard supports research at EPA in numerous ways – Assembly, integration and curation of chemistry data – Flexible searches – names, structures, formulae, masses • Proof-of-Concept tools – https://www.epa.gov/chemical-research/cheminformatics – Hazard Profiling tool – Safety Profiling and comparison (in testing) – Analytical methods and open spectra database (in testing) 45
  • 47. Contact Interested in a demo and overview of our tools? Antony Williams CCTE, US EPA Office of Research and Development, Williams.Antony@epa.gov ORCID: https://orcid.org/0000-0002-2668-4821 46